Biochemical Models
The following models can be found in the BioModels database as SBML files.
1. IL-6 and IL-22 pathway in human hepatocytes. ID: MODEL250910000 (2025)
2. Holistic View on the Structure of Immune Response: Petri Net Model. ID: MODEL2304260001 (2023)
3. Canonical NF-kB pathway, Petri net. ID: MODEL2207210001 (2022)
4. Non-canonical NF-kB pathway, Petri net. ID: MODEL2207210002 (2022)
5. Crosstalk between the canonical and non-canonical NF-kB pathways, Petri net. ID: MODEL2207210003 (2022)
6. TNFR1 Signal Transduction, Petri Net. ID: MODEL2210170001 (2022)
7. Petri Net Model of Core Metabolism in Arabidopsis thaliana. ID: MODEL1801090001 (2017)
8. TNFR1-mediated Nf-κB signaling, Petri Net. ID: MODEL2312010001 (2017)
9. In Silico Knockout Studies of Xenophagy Capturing of Salmonella. ID: MODEL190415000 (2016)
10. Exhaustive Analysis of the Modular Structure of the Spliceosomal Assembly Network: A Petri Net Approach. ID: MODEL2406180001 (2010)
11. Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets. ID: MODEL2410300001 (2009)
12. Gene regulation and signaling of Duchenne muscular dystrophy. ID: MODEL1403120000 (2008)
13. Mating pheromone signaling pathway in S. cerevisiae. ID: MODEL1403040000 (2006)
14. Central carbon metabolism in potato tubers - the sucrose breakdown pathway. ID: MODEL1308080002 (2005)